rs33100859 SNP Detail

Summary

• ID
  rs33100859
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95032743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGCAGCT GTGTCAGGGC
  AAGAGACGTT GCCGGGTAAG GTTGTAGGGG AGGGTGCTAC CAGGATTTCT CCATCGCACG
  GTGGGTGGAT AGACCCAGCC TGGAGACTAG AATCCCCATC TAGAATGGCT AGAAAGTGCA
  GGGACTAGGA GGGAAACTAA CAGTGAACTA TCTGATTTTC CCATCCCTGG CAGACTCTAG
  Y
  CTCTAAGGTC AGTGTCCTAA CTATGGCTGG ACTTCTTGTG CCCTCAGTGT CCACATCCAA
  CAACTTTTCT CATGTCCCCC AGGCTGTGAG TGTCACACCG TGGGGAAGGG GTAGGGGCCA
  CCATGTCATC CTATCAGAAG GAACTGGAGA AATACAGAGA CATCGACGAA GATGAGATCC
  TAAGGACCCT GAGCCCTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46771748	NES10667114	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33100859					SNP	T	T	T	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771748	NES10667114	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95032743 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr580819	regulatory region 580819			907 bp distal
Rr580820	regulatory region 580820			62 bp distal
Tmod4	tropomodulin 4			Intron
				mRNA-UTR
Tssr967	transcription start site region 967			983 bp downstream
Tssr30491	transcription start site region 30491			967 bp downstream
Tssr30492	transcription start site region 30492			872 bp downstream
Tssr30493	transcription start site region 30493			757 bp upstream
Tssr30494	transcription start site region 30494			774 bp upstream
Tssr30495	transcription start site region 30495			786 bp upstream
Tssr30496	transcription start site region 30496			808 bp upstream
Tssr30497	transcription start site region 30497			1993 bp upstream