rs33100988 SNP Detail

Summary

• ID
  rs33100988
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:5936766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GAGTTCAGGC TGGTCCTTCT CTGCTGGCTG CTGGCTACTG GCTGCTGGCT ACTGGCTGCT
  GCCTGCTGCC TGCTGCCTGC TGCCTGCTGC CTGCTGCCTG CTGCCTGCTG GCTACTGGCT
  GCTGCCTGCT GCCTGCTGCC TGCTGCCTGC TGCCTGCTGC CTGCTGCCTG CTGCCTGCTG
  CCTGCTGCCT GCAGGGCGTT TACTGAGGAT AGGTTTAGTG AGTGCAGCTG CACTGTCCTC
  TGTCACAGCC ACATGCCCCA CAAGTAGGTG ATCCACTTTG AAAGTTCGAA AATCAGAGCT
  R
  TTTGGGAGAA CTGGCTAGTA TACATAGTCC TGTTGTAGCT CTTGGTCCGG CGGAAAGTGT
  GGAAGAGTGT CCGTGTCTGC TGTGTGAGGC TAGAAGTCAT CCTAGGGGCT AGCTCCTGGG
  CTGAAGAGTG ATCCCAAGAG TTTCTGTCGT GTGTAAGGCT GGCATAGCAT GCCTGCCTGT
  GTGCAATGCC TCCATTCCTG AGTGGACCCA TTACCAGTGC CTGCATCTGC TTCTGACCAC
  ATGGAAGGGG AGGGCTTTTG CTTTAATGAA GCAGGTGTGT TTGGAATTGT ATTTTAGGAC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39494369	mCV23634263	ABI	CRAMUS_MOUSE	f	SNP		G	A					A		A
ss60525977	NES16545808	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		G	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33100988					SNP	G	G	A	A	A	A	A	A	G	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60525977	NES16545808	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:5936766 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8563	CpG island 8563	513 bp proximal
Rr332307	regulatory region 332307	566 bp distal
Rr332309	regulatory region 332309	1035 bp proximal
Rr335511	regulatory region 335511	1635 bp proximal
Rr342320	regulatory region 342320	within coordinates
Rr370166	regulatory region 370166	783 bp downstream
Snx9	sorting nexin 9	within coordinates