rs33101251 SNP Detail

Summary

• ID
  rs33101251
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:31203628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAG TGCTCCAATC TCACTAGTCC
  Y
  AAGACTAAGA AAGGAACAGA GTGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45737153	mCV22340579	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss321503412	CHEV_5_31348657	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs33101251					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:31203628 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15696	CpG island 15696	1451 bp proximal
D5Jcs306	DNA segment, Chr 5, John C. Schimenti 306	8 bp distal
Rr117832	regulatory region 117832	1828 bp distal
Rr125009	regulatory region 125009	972 bp proximal
Slc5a6	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	within coordinates
Tssr50520	transcription start site region 50520	1574 bp downstream
Tssr50521	transcription start site region 50521	1595 bp downstream
Tssr50522	transcription start site region 50522	1714 bp downstream
Tssr50523	transcription start site region 50523	1730 bp downstream
Tssr50524	transcription start site region 50524	1952 bp downstream