rs33101325 SNP Detail

Summary

• ID
  rs33101325
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126291501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCAGGAA GCACACGAAA
  GAGCTGTGAC TTCAGAAGGA GACCAGGGAA GATCTCACAG GATGGCTGGT TGTCCTTTCG
  GAGGCTCGAA CAGCCTCTGG CTGGTACTAT AGGTTCGGAA AGAACTGCCC TCCTCATTAG
  ACATGTGTCA GGGTGGGCAA AGTCCCAGGT CTCCGCCCCG ATGTGCCCTT ACCTGCAGCA
  K
  ACGCGCACAC AGACTGCATC TGGCCTTGGT ACCTAGATCC AGCTGTCGCT CGCTGTCAGC
  CTCGCTTACA GCTGGTCGTT TTGGGACTAA GGGCTGGGGT GGAGGTGGTC CAAAGGCAAT
  GGGCATGTGT GCCGGTGGCG CTGGACAGAG TTCATGGCGG AAGTCAGGTC GCAGCCAACG
  CAGTGTTAGA GGAAGGCGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47256482	NES11566866	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33101325					SNP	G	G	G	G	G	T	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47256482	NES11566866	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126291501 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19704	CpG island 19704	within coordinates
Rr400629	regulatory region 400629	1052 bp upstream
Rr655563	regulatory region 655563	1261 bp distal
Rr655564	regulatory region 655564	809 bp proximal
Rr655565	regulatory region 655565	1101 bp proximal
Rr655566	regulatory region 655566	1277 bp proximal
Slx1b	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	within coordinates