rs33101834 SNP Detail

Summary

• ID
  rs33101834
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95033629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTGATT TTTGAGATAG
  GATCTCCTTG TGCAGCCCGG GTTGGCCCTG AACTAGCAGT CCTACTACTC TAGCTTGCCA
  AATGCTGAGA TCACAGACAT CTGCCAGCAC ACCAGCCTGT CCTCTTCAAT CCTTAGGAGG
  GAATGAGAGG ACCAGAGAGT CCCTGTACAA CATTCAGGCT TTCTGATGTC ACTAGTGATC
  Y
  AGTCTGACCC CATATGGAAA AGATAGAGAA GGTGGAGCCA CCATCTTGGA AGAAACCACC
  TCTGCCTGAA CAGTCCTTCA TCTCTCTATC AGGAAAACCC TTTATTCAGC CTAAGAGAGA
  AATCCCAGCA CAGGAACAGA TTACGCTGGA GCCTGAGCTG GAGGAAGCGC TGTCCCATGC
  TACAGATGCT GAAATGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss46771754	NES10667024	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs33101834					SNP	C	C	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771754	NES10667024	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95033629 () rs orientation: forward

Symbol	Name	Function Class
Rr580819	regulatory region 580819	1793 bp distal
Rr580820	regulatory region 580820	948 bp distal
Tmod4	tropomodulin 4	Intron
Tssr967	transcription start site region 967	1869 bp downstream
Tssr30491	transcription start site region 30491	1853 bp downstream
Tssr30492	transcription start site region 30492	1758 bp downstream
Tssr30493	transcription start site region 30493	119 bp downstream
Tssr30494	transcription start site region 30494	105 bp downstream
Tssr30495	transcription start site region 30495	91 bp downstream
Tssr30496	transcription start site region 30496	69 bp downstream
Tssr30497	transcription start site region 30497	1107 bp upstream