rs33101841 SNP Detail

Summary

• ID
  rs33101841
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95034991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGAGAGG TTGCAAATGT
  GAGACATGGT GCATGAACGT TTAGAGGGCT AGTGGGGAGG TATGGTGGGG GATATGTTGG
  GGTTCCCTTT CTGCTCTGTT CCTCATCAGG TGTGGTACAG CCTGACAAGT ATAAGCCAGT
  ACCAGATGAA CCTCCAAATC CCACAAACAT TGAGGAGATG CTAAAGAGGG TACGGAGTAA
  Y
  GACAAAGAGC TGGAGGAGGT GAACCTCAAT AATATCCAGG TATCAGACTC CCATCCCCAT
  AGAAACAGGA ATAGCTACTG ACCAACGAGG GTTCGCAGTT CACCATCCCT TGTGCCCCCT
  CAGGACATCC CAATACCTGT GCTAAGTGAC TTGTGTGAAG CAATGAAAAC CAATACCTAT
  GTCCGGAGCT TCAGTCTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46771763	NES10666959	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33101841					SNP	T	T	C	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771763	NES10666959	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95034991 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr580821	regulatory region 580821			1502 bp proximal
Tmod4	tropomodulin 4			Coding-Synonymous
				Noncoding-Transcript-Variant
Tssr30493	transcription start site region 30493			1481 bp downstream
Tssr30494	transcription start site region 30494			1467 bp downstream
Tssr30495	transcription start site region 30495			1453 bp downstream
Tssr30496	transcription start site region 30496			1431 bp downstream
Tssr30497	transcription start site region 30497			220 bp downstream