rs33101854 SNP Detail

Summary

• ID
  rs33101854
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:83078947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCCTTCAGT CACTCAGGAC TGTGCCTGAC TGAAATCTTA
  TCAAGCAAAT GACAAGAGGA GAAATGAAAA TGTGTTTCCT GGCCATAGAT AGCATTTGAG
  Y
  GTCAGCACTG CTCATGGCAT GGATGTACAA GGAAACAGCT TGTTGGGGTC ACTAATTACT
  CTTGACTTAT TTTCTTATTT TTAAAGAGAA ATGCCTCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46235019	mCV24054900	ABI	CRAMUS_MOUSE	f	SNP		C	C					T
ss51971200	NES14983447	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	C	T	C		T	C	C		C
ss145303213	ENSMUSSNP2996326	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss322735736	CHEV_8_84876217	CHEVERUD	SCREENING_POP	f	SNP													C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33101854					SNP	C	C	C	C	C	C	C	T	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51971200	NES14983447	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:83078947 () rs orientation: forward

Symbol	Name	Function Class
Il15	interleukin 15	within coordinates
Rr382378	regulatory region 382378	1378 bp downstream
Rr400995	regulatory region 400995	766 bp downstream
Rr666114	regulatory region 666114	666 bp distal
Rr666115	regulatory region 666115	873 bp distal
Tssr81943	transcription start site region 81943	1090 bp downstream
Tssr81944	transcription start site region 81944	1134 bp downstream
Tssr81945	transcription start site region 81945	1177 bp downstream
Tssr81946	transcription start site region 81946	1232 bp downstream