rs33102442 SNP Detail

Summary

• ID
  rs33102442
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47880087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAC TCCTACCCAG CCGGAGATGA
  Y
  CTTGAACTGC TGATCCTCCT GACTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39494288	mCV23449091	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss145708079	ENSMUSSNP6610374	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss325406358	CHEV_17_47706111	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33102442					SNP	C	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47880087 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3	cyclin D3	within coordinates
D17Dcr11	DNA Segment, Chr 17, Derry C. Roopenian 11	1028 bp proximal
D17Mit68	DNA segment, Chr 17, Massachusetts Institute of Technology 68	994 bp proximal
Rr392688	regulatory region 392688	1974 bp upstream
Rr528048	regulatory region 528048	1550 bp distal
Rr528049	regulatory region 528049	within coordinates