rs33102858 SNP Detail

Summary

• ID
  rs33102858
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95035609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             ACACAAGTCC CTACCACCCA GGCGGTGGCT GACATGTTGC GTGAGAACCG
  M
  AGTCTCCAGA GCCTGAACAT TGAGTCTAAC TTCATCAGCA GCACAGGGCT           
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46771775	NES10666963	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33102858					SNP	C	C	A	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771775	NES10666963	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95035609 () rs orientation: forward

Symbol	Name	Function Class
Rr580821	regulatory region 580821	884 bp proximal
Scnm1	sodium channel modifier 1	1421 bp downstream
Tmod4	tropomodulin 4	Coding-Synonymous
Tssr30497	transcription start site region 30497	838 bp downstream