rs33102860 SNP Detail

Summary

• ID
  rs33102860
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95036042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCCATGGG CCGGGGTGGT
  GAACTGCCAT TCATATCTGA TGGCTTTCAC CTCTCCATCC ATCCTCCAGC GCCAGTGGCC
  TGGTGATGCG GTAGAGATGG AGATGGCCAC TGTGCTAGAG CAGTGTCCGT CTATTGTCCG
  CTTCGGGTAC CACTTTACAC AACAAGGACC ACGAGCTCGG GCAGCCCACG CCATGACCCG
  R
  AACAATGAGC TGCGTGAGTA ACTAGACCCC GTGCAGAGAA GGCAGGTTCG AAAGACACAC
  TCGGTAGCAA ATGCTTGGGT GGTGGCAAAC ATGAGTGGAG CTGAATAACA GGGAGACAGA
  CAAGTCCTTC CCCAGATACA CACCTATAGA GAAGGTAGGG GTGGGGAGCT TGGCATGATT
  GTACCCCTAG AGTCCCTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46771778	NES10666964	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33102860					SNP	G	G	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771778	NES10666964	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95036042 () rs orientation: forward

Symbol	Name	Function Class
Rr580821	regulatory region 580821	451 bp proximal
Scnm1	sodium channel modifier 1	988 bp downstream
Tmod4	tropomodulin 4	Coding-Synonymous
Tssr30497	transcription start site region 30497	1271 bp downstream