rs33102863 SNP Detail

Summary

• ID
  rs33102863
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95036464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGTTTTT TCAACATGAA
  ACGGGCCCAT CAGATGGCAC GAGGCAGCAC CTTATGAGTC TGCCCAAGGA AAGGAAAGAA
  ACGCACCCTT GCCAAAACAA CAAATGGAGC TCTGTTTACG GCTCTTCCTT TCCAGGTCGT
  CAGCAAAAGA AGAGATAACA TCACCCTTCC TTTTACCAAC AAGAGATGAG AGCCTGGGAC
  R
  CACAGATCCT CATCTCTCTC TCCTTTCCTG TAAATAAAAT CCCTTTTGTT CACGCCGCCT
  GTCTCCTTGC CTGGATTGGG GTGGGAATCT TGGCGCTACC CTCCAAGGGT TACTGCCAGT
  TCATCAAGAG ATTATTTATA CTCTGGGGAT CAGCAGGCAG GGGTTCAGGT TACCAGGAGA
  GGGGGAGCTC TGTCCGTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46771784	NES10666966	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33102863					SNP	G	G	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771784	NES10666966	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95036464 () rs orientation: forward

Symbol	Name	Function Class
Rr580821	regulatory region 580821	29 bp proximal
Scnm1	sodium channel modifier 1	566 bp downstream
Tmod4	tropomodulin 4	mRNA-UTR
Tssr30497	transcription start site region 30497	1693 bp downstream