rs33102975 SNP Detail

Summary

• ID
  rs33102975
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:145068829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCC GTACCTTTCT AATGCGCACT
  K
  ATACCTTGGA GGAGCAGCAT AAGGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45737800	mCV25297274	ABI	CRAMUS_MOUSE	f	SNP	T	G	G	G
ss321712392	CHEV_5_145892888	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33102975					SNP	T	G	G	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:145068829 () rs orientation: forward

Symbol	Name	Function Class
Pdap1	PDGFA associated protein 1	within coordinates
Rr624550	regulatory region 624550	1402 bp proximal
Rr624551	regulatory region 624551	1440 bp proximal
Tssr49741	transcription start site region 49741	539 bp downstream
Tssr54419	transcription start site region 54419	863 bp downstream
Tssr54420	transcription start site region 54420	921 bp downstream