About   Help   FAQ
rs33104075 SNP Detail
Summary
  • ID
    rs33104075
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr3:95036659 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGGACGCACA GATCCTCATC
    TCTCTCTCCT TTCCTGTAAA TAAAATCCCT TTTGTTCACG CCGCCTGTCT CCTTGCCTGG
    ATTGGGGTGG GAATCTTGGC GCTACCCTCC AAGGGTTACT GCCAGTTCAT CAAGAGATTA
    TTTATACTCT GGGGATCAGC AGGCAGGGGT TCAGGTTACC AGGAGAGGGG GAGCTCTGTC
    M
    GTTGTGTTCC CCATAAATCT GCCAAAGGCT TTAGTCTCTC AGCAGGGTAC TTGGCCTCAG
    TCCTCTGTGA CAAAGCTGTA GACAGAGGTG GCCAGAGCCC CTTAGTGCCT AGCCACAGTG
    TGATCTGTGA GAAAAGGACT CACTGGAGGC GGGGAAGGAG TCAGACTCCA TGAAGGGCAG
    CGACCTCTTT CTGACAGACT                                            
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
BTBR T<+> Itpr3/J
CAST/EiJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46771787 NES10666967 PERLEGEN MM_PANEL2 f SNP C C C C C C C A C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
BTBR T<+> Itpr3/J
CAST/EiJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs33104075 SNP C C C C C C C A C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss46771787 NES10666967 PERLEGEN MM_PANEL f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:95036659 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr580821 regulatory region 580821 within coordinates
Scnm1 sodium channel modifier 1 371 bp downstream
Tmod4 tropomodulin 4 139 bp downstream
Tssr30497 transcription start site region 30497 1888 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/25/2025
MGI 6.24
The Jackson Laboratory