GGGACGCACA GATCCTCATC TCTCTCTCCT TTCCTGTAAA TAAAATCCCT TTTGTTCACG CCGCCTGTCT CCTTGCCTGG ATTGGGGTGG GAATCTTGGC GCTACCCTCC AAGGGTTACT GCCAGTTCAT CAAGAGATTA TTTATACTCT GGGGATCAGC AGGCAGGGGT TCAGGTTACC AGGAGAGGGG GAGCTCTGTC M GTTGTGTTCC CCATAAATCT GCCAAAGGCT TTAGTCTCTC AGCAGGGTAC TTGGCCTCAG TCCTCTGTGA CAAAGCTGTA GACAGAGGTG GCCAGAGCCC CTTAGTGCCT AGCCACAGTG TGATCTGTGA GAAAAGGACT CACTGGAGGC GGGGAAGGAG TCAGACTCCA TGAAGGGCAG CGACCTCTTT CTGACAGACT M = A/C Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
BTBR T<+> Itpr3 |
CAST/EiJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss46771787 | NES10666967 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | C | C | C | C | A | C |
SNP Consensus Information | ||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
BTBR T<+> Itpr3 |
CAST/EiJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs33104075 | SNP | C | C | C | C | C | C | C | A | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46771787 | NES10666967 | PERLEGEN | MM_PANEL | f | SNP | A/C |
Location: Chr3:95036659 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Rr580821 | regulatory region 580821 | within coordinates | ||||||
Scnm1 | sodium channel modifier 1 | 371 bp downstream | ||||||
Tmod4 | tropomodulin 4 | 139 bp downstream | ||||||
Tssr30497 | transcription start site region 30497 | 1888 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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