rs33104078 SNP Detail

Summary

• ID
  rs33104078
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95036773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCC AGAGCCCCTT AGTGCCTAGC
  Y
  ACAGTGTGAT CTGTGAGAAA AGGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46771793	NES10666971	PERLEGEN	MM_PANEL2	f	SNP	C			C	C			T	T	C	T		T
ss135510053	ENSMUSSNP2217619	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T			T
ss320841130	CHEV_3_94933384	CHEVERUD	SCREENING_POP	f	SNP							T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33104078					SNP	C	C	T	C	C	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771793	NES10666971	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95036773 () rs orientation: forward

Symbol	Name	Function Class
Rr580821	regulatory region 580821	within coordinates
Scnm1	sodium channel modifier 1	257 bp downstream
Tmod4	tropomodulin 4	253 bp downstream
Tssr30498	transcription start site region 30498	1973 bp upstream