rs33104217 SNP Detail

Summary

• ID
  rs33104217
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25103582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATCCAGCTG CCCCCAGGCC ACGTCAGACA CAAACTGCTT
  TATCAGTGCT GCAAAGACCC CAAAGCCCAG CAGTAATCCC TGAGAAAGGG TTAGGAAAGG
  R
  AAGGCCCATC TTGTCCAGCC CAGGATCTCC ATCAGTTGCT TCTGGGCAGC TCCCAGGGAA
  CCCTGGGGAC ATGTGCCACA CACGGCAGCC AGGGCCCGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39495138	mCV25251485	ABI	CRAMUS_MOUSE	f	SNP		G	A	G
ss145368906	ENSMUSSNP384988	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33104217					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25103582 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8747	CpG island 8747	1197 bp proximal
Nubp2	nucleotide binding protein 2	within coordinates
Rr339336	regulatory region 339336	418 bp proximal
Rr405096	regulatory region 405096	1659 bp upstream
Tssr143106	transcription start site region 143106	1354 bp upstream
Tssr143107	transcription start site region 143107	1367 bp upstream
Tssr143108	transcription start site region 143108	1394 bp upstream
Tssr143109	transcription start site region 143109	1412 bp upstream
Tssr146788	transcription start site region 146788	1251 bp downstream
Tssr146789	transcription start site region 146789	1264 bp downstream
Tssr146790	transcription start site region 146790	1292 bp downstream
Tssr146791	transcription start site region 146791	1328 bp downstream
Tssr146792	transcription start site region 146792	1696 bp downstream
Tssr146793	transcription start site region 146793	1775 bp downstream