rs33104405 SNP Detail

Summary

• ID
  rs33104405
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:147378125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGA GGTCACAGTG CATCCTGGTG
  R
  GGAACCCGAG CTGTAGGACC TTAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45737552	mCV22624885	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss144672938	ENSMUSSNP3177690	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33104405					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:147378125 () rs orientation: forward

Symbol	Name	Function Class
Gm42883	predicted gene 42883	1704 bp downstream
Pan3	PAN3 poly(A) specific ribonuclease subunit	within coordinates
Rr624946	regulatory region 624946	355 bp proximal
Rr624947	regulatory region 624947	664 bp proximal
Tssr49828	transcription start site region 49828	1975 bp downstream