rs33104521 SNP Detail

Summary

• ID
  rs33104521
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24657626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGC ACTCAGGAGG CAGAGGCAGG
  Y
  AGATTTCTGA GTTCGAGGCC AGCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39494795	mCV25112353	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss145355213	ENSMUSSNP697662	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss325331690	CHEV_17_24575597	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33104521					SNP	C	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24657626 () rs orientation: forward

Symbol	Name	Function Class
Dnase1l2	deoxyribonuclease 1-like 2	1428 bp downstream
Eci1	enoyl-Coenzyme A delta isomerase 1	within coordinates
Rr329767	regulatory region 329767	826 bp distal
Rr329768	regulatory region 329768	775 bp proximal
Rr337043	regulatory region 337043	750 bp proximal
Rr340709	regulatory region 340709	1042 bp distal
Rr340710	regulatory region 340710	1575 bp proximal
Tssr146730	transcription start site region 146730	1743 bp downstream