rs33104696 SNP Detail

Summary

• ID
  rs33104696
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:143831331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTATA GGAAGTGAAA AATAATTCAC
  M
  TTACATGACA TCGTCGCTGT GGGTG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss45738124	mCV23731820	ABI	CRAMUS_MOUSE	f	SNP	C	C	A					C	A
ss60852800	NES16000979	PERLEGEN	MM_PANEL2	f	SNP	C			C	A	C	A		A	A		A		A
ss144604666	ENSMUSSNP2368212	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A						A
ss321708648	CHEV_5_144655382	CHEVERUD	SCREENING_POP	f	SNP											A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs33104696					SNP	C	C	A	C	A	C	A	C	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60852800	NES16000979	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143831331 () rs orientation: forward

Symbol	Name	Function Class
Ankrd61	ankyrin repeat domain 61	within coordinates
Eif2ak1	eukaryotic translation initiation factor 2 alpha kinase 1	within coordinates
Tssr54383	transcription start site region 54383	473 bp downstream
Tssr54384	transcription start site region 54384	512 bp downstream
Tssr54385	transcription start site region 54385	565 bp downstream