rs33104921 SNP Detail

Summary

• ID
  rs33104921
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95030570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAACAAA TAAATAAATA
  AATAAACCAC AAGTTCTTGC TAATTTATCC AGACTAATTT CAGACTCCTG GGCTCAAGCA
  AGCCTCCCAT GTCAACCTTC CAAGCGCTGG GCCTAGAGGG GTAAATCACT GTTCCTGCTC
  TGTCCTTTTA AGTAGCATGT ATTTACTAAG TAGTGGGTGT CATAAAGATG CCTGCACTCA
  Y
  GTCTATCATT TTTATTACAC TTACCTGGGT TATCCATATT TAACTCTCTT AGTCTGTCTT
  AGTCAGGGTT CCTATTCCTG CACAAACATC ATGACCAATA AGCAAGTTGA GGAGGAAAAG
  GTTTATTCAG CTTATACTTT CCACATTGCT GTTAATCACC AAAGGAAGTC AAGCAGGTCA
  GGGAGCAGGA GCTGATGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46771721	NES10667259	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33104921					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771721	NES10667259	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95030570 () rs orientation: forward

Symbol	Name	Function Class
D3Umi9	DNA segment, Chr 3, University of Michigan 9	618 bp distal
Rr580818	regulatory region 580818	1249 bp distal
Rr580819	regulatory region 580819	1045 bp proximal
Rr580820	regulatory region 580820	1267 bp proximal
Tmod4	tropomodulin 4	mRNA-UTR
Tssr967	transcription start site region 967	1178 bp upstream
Tssr30490	transcription start site region 30490	727 bp downstream
Tssr30491	transcription start site region 30491	1192 bp upstream
Tssr30492	transcription start site region 30492	1223 bp upstream
Vps72	vacuolar protein sorting 72	208 bp downstream