rs33105039 SNP Detail

Summary

• ID
  rs33105039
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95037462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCCAGGA ACCTACAGCA
  TAGGAAGGAA GAACCAACCC CTGTAAGCTG CCCTCAGACT TACAGAAGTG TGCCCCTATA
  AAGATAAATA AGCAAATACA ATTTTTTAAA AGGTTACTGG TGATAAGAAA AAAGCAGTTG
  GATTGGTCTG AAAACAGGCA GGTCCCGGGG AAATAGAAGG AAACCCAAGG ACCGCAATCC
  R
  GCACTCACTC ACCTTCGGAG GGTAAGGTAA TGGTTCAGGA CTCATCGTTT GGTGGGGCTC
  ATGGGTGCAG AGGCCAAGAG AGCTGCTGAC TCTTTGGCAT CTGATCTCTC CCTAGGCTCA
  GGTTCCTTAC TGATCTCTGC ACTCTGGAGT TGGACCTCTG CAGTTGGCAA AGGAGGACTG
  GAGACAGAGG GAGCAGGGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46771808	NES10666982	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33105039					SNP	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771808	NES10666982	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95037462 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr580821	regulatory region 580821			426 bp distal
Scnm1	sodium channel modifier 1			Intron
				Noncoding-Transcript-Variant
Tmod4	tropomodulin 4			942 bp downstream
Tssr30498	transcription start site region 30498			1284 bp upstream