CATCCCAGGA ACCTACAGCA TAGGAAGGAA GAACCAACCC CTGTAAGCTG CCCTCAGACT TACAGAAGTG TGCCCCTATA AAGATAAATA AGCAAATACA ATTTTTTAAA AGGTTACTGG TGATAAGAAA AAAGCAGTTG GATTGGTCTG AAAACAGGCA GGTCCCGGGG AAATAGAAGG AAACCCAAGG ACCGCAATCC R GCACTCACTC ACCTTCGGAG GGTAAGGTAA TGGTTCAGGA CTCATCGTTT GGTGGGGCTC ATGGGTGCAG AGGCCAAGAG AGCTGCTGAC TCTTTGGCAT CTGATCTCTC CCTAGGCTCA GGTTCCTTAC TGATCTCTGC ACTCTGGAGT TGGACCTCTG CAGTTGGCAA AGGAGGACTG GAGACAGAGG GAGCAGGGGC R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
BTBR T<+> Itpr3 |
CAST/EiJ |
DBA/2J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss46771808 | NES10666982 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | A | G | A | A | G | A |
SNP Consensus Information | ||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
BTBR T<+> Itpr3 |
CAST/EiJ |
DBA/2J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs33105039 | SNP | A | A | A | A | G | A | A | G | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46771808 | NES10666982 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr3:95037462 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Rr580821 | regulatory region 580821 | 426 bp distal | ||||||
Scnm1 | sodium channel modifier 1 | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Tmod4 | tropomodulin 4 | 942 bp downstream | ||||||
Tssr30498 | transcription start site region 30498 | 1284 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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