rs33105089 SNP Detail

Summary

• ID
  rs33105089
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:126429708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTATG TGTGTGTGTG
  TGTGTGCGCG CGCCTGCAGC CTGGGAGGAA TGGGGTGTGT GAATGGCCAC TTCGAAGTCA
  GGGAGAAGGA GGAGGTGGGG GATGGGTGGC TACATAGAGG GCTACTGCAG TCTAGGAGGA
  AGGAGGCACC ACCTTTATTT CTCAACAGAA GGCAGGGTAG ATGTGTGTGG CTCACAGCTG
  R
  GTCCAGGGCT CCGTCTCTGG CTCACCTGCT CACCTCAGCT GGCTCTGGCT GGATATCTCA
  TTAGGCCCCT TTCTGGAAGT TCCTGAGGAG TATGGAGATC AGATGAGGAG GGACACATAG
  GAGACTTGGG TCCTCTGGAA GGGGTAGGGC GAGGACACAG AGACACAACT CACACATGCA
  AGCAGAACTG GAAAAGCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47257361	NES11560969	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33105089					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47257361	NES11560969	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126429708 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930451I11Rik	RIKEN cDNA 4930451I11 gene			mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi19716	CpG island 19716			1759 bp distal
Cpgi19717	CpG island 19717			1036 bp distal
Gm73869	predicted gene, 73869			987 bp upstream
Rr655626	regulatory region 655626			1284 bp proximal
Rr655627	regulatory region 655627			1567 bp proximal
Tlcd3b	TLC domain containing 3B			317 bp downstream
Tssr74840	transcription start site region 74840			930 bp downstream
Tssr74841	transcription start site region 74841			1129 bp downstream