rs33105467 SNP Detail

Summary

• ID
  rs33105467
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:3676123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGGTAGC CAAGGAAGAA
  GTTGGGGTCC AGGCCTCTTC CCTTAATCCC TGCACTCTCC ACAGACCAAC CAACCAACCC
  GGCTCCTGCT ACCCGACCAC CTGTGAAACT ACCGGATGCT CCTGTTTATC TGCCCCTCAA
  ATGCCAATTT GAGTTGTCTT CGTCTTTCAT TTATGCATGG AGCAGGACAG GAAGTCCCTG
  W
  CCATTTCATT GATGAGCTGT GGCTTTCTGA CCATGCTCTG AGAGTCTGTT CCTATCTCCA
  AGATACCTTT CAGGAAACCA GTTAAGCTTC TTTTTTTCTG GGATAGTGAG GTAGTTCATG
  GGCTAAGAGC ACTAGCTGCA TTTCCAGAGT ACTAGGTTTG AGTCCCAGCA CCCACATAAC
  AGCTCACAAC CATCTGTAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46234867	mCV22852514	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A	A
ss148547080	ENSMUSSNP4937353	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33105467					SNP	T	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3676123 () rs orientation: forward

Symbol	Name	Function Class
Pcp2	Purkinje cell protein 2 (L7)	578 bp upstream
Pet100	PET100 homolog	1888 bp downstream
Rr658952	regulatory region 658952	1969 bp proximal
Tssr80204	transcription start site region 80204	1546 bp upstream
Tssr80205	transcription start site region 80205	1456 bp upstream
Tssr80206	transcription start site region 80206	1197 bp upstream
Tssr80207	transcription start site region 80207	1140 bp upstream
Tssr80208	transcription start site region 80208	1109 bp upstream
Tssr80209	transcription start site region 80209	1081 bp upstream
Tssr80210	transcription start site region 80210	911 bp upstream
Tssr80211	transcription start site region 80211	870 bp upstream
Tssr80212	transcription start site region 80212	835 bp upstream
Tssr80213	transcription start site region 80213	826 bp upstream
Tssr80214	transcription start site region 80214	575 bp upstream
Tssr80215	transcription start site region 80215	543 bp upstream