rs33105942 SNP Detail

Summary

• ID
  rs33105942
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:166525792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCATCTT GTTCACGAAG
  TCCCCCGGGT GACTCCTCGA CACTGAGATG CCTCATCACG CCCCCCTCCT TTCCCTTCCA
  ATCCCAGGAG ACCAGTTTTG CTTCACTAGG ACACCTCCTG GTCCAGGCTG CCACCAGCCG
  TATACAGCAC CTCTTACTGC TTTTCTAGCT CAGCCTCAAT TGACCCACGG GACCCAGAGA
  M
  GCACAGGATA GACCCACACA CACACAAACT TCTGCCCGCT TAAAGCCCTC ATCTCATAAG
  CATCTGTTCT CACCCCTATT CCCTACTCCC CACCCCCACC CACCCTGCCA GAAGTCCTGC
  TCGTCTCCGT AGCGGGCCCT GAACTGCTGG CCAAATCACT TGCCTCATCT CAGATTCAAG
  CCTTTCCGGC CTGACCACGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45237363	mCV23066180	ABI	CRAMUS_MOUSE	f	SNP	C	A	A	A
ss148258104	ENSMUSSNP534877	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33105942					SNP	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166525792 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm56395	predicted gene, 56395			1452 bp downstream
Prex1	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1			Intron
				Noncoding-Transcript-Variant
Rr570343	regulatory region 570343			595 bp distal
Rr570344	regulatory region 570344			within coordinates
Rr570345	regulatory region 570345			1945 bp proximal