rs33105981 SNP Detail

Summary

• ID
  rs33105981
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126431442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGCAGGCT CCTCTCTTGG GACTGGCTGT CACCGGGAGG
  CGGGGAGGCG AAGAGGGCTG AGGGTGTTGT CAACAGACGA ACTCCCCAGG CTCATTCCAA
  R
  GCTAATCTCT CGGCCATTCA AAGATCCTAG TCTACTCGCC TCACCGTGAC TCAGTTTCCC
  TTTTGGTGGT ATTGGTGGCA TGTGAACCTC ACCGTCCACC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47257373	NES11560854	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33105981					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47257373	NES11560854	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126431442 () rs orientation: forward

Symbol	Name	Function Class
4930451I11Rik	RIKEN cDNA 4930451I11 gene	730 bp upstream
D7Sri88	DNA segment, Chr 7, The Scripps Research Institute 88	1289 bp proximal
Gm73869	predicted gene, 73869	within coordinates
Rr655626	regulatory region 655626	within coordinates
Rr655627	regulatory region 655627	146 bp distal
Tssr74840	transcription start site region 74840	789 bp upstream
Tssr74841	transcription start site region 74841	589 bp upstream