rs33108555 SNP Detail

Summary

• ID
  rs33108555
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:119822645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGATTGT TGTGTGAGTA
  GGGGGGGGGG GGGAACGGCC TTGCGGAGGC CACCATAGAA CCGTCCTAAT TTTTCATAGA
  CTCTGGCATC TTACTAACCC ATGTGAGGTT TTCATTGTTC ATCTTTATGG TGTTTTGGAT
  TGGTGTACTG AGAGGGACTT GGTTCAAACG ACCATGAAAG GCAAAACAAA ACAAAAAATT
  W
  AAAAAAAAAA CAAAAAACAA CAACAAAAAA ACAAAAAAAA AACCCAAGAA GGAGTATTTT
  GTGTTTAGTC TTTGATGAGT TTTCTGTAAT TCTCCCCCTC TTTAAAAACA TCACTGAAAT
  TTCAATAAAT TTTTATTGAA ATGAGTTTTG AAGTTGTGGT AATGATTTCT TCAAGAGTTG
  TCTTTCAGAG CCGGATCGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45738801	mCV25099956	ABI	CRAMUS_MOUSE	f	SNP	T	T	A
ss149174085	ENSMUSSNP3086524	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs33108555					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:119822645 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16459	CpG island 16459	1514 bp distal
Rr619145	regulatory region 619145	167 bp proximal
Rr619146	regulatory region 619146	1898 bp proximal
Tbx3	T-box 3	within coordinates
Tbx3os2	T-box 3, opposite strand 2	508 bp downstream
Tssr1618	transcription start site region 1618	35 bp downstream