rs33108627 SNP Detail

Summary

• ID
  rs33108627
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95157643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCAAACCT GGGGGCGAGC
  AGCTCTCAGC CTCACCTAGG AAACTCTTCA TCTTGCCACT CCTCTCTTAG CTCCAGCTCT
  CCAAGTTTCA TGGTTGCTCC TGGTTCTGAG GCTCCTGCCT TCTCCTTAGC CCTGAGAGTC
  AGTGGCCCAG AAGAAAAGAC CATGAATCAA CCTAGACAGT ATCCTAAGGG AGCCAGACAT
  Y
  AGGTGGAAGC CACTGGTGTG AAGAACATGG CAAGGAGGCC CCGTCTATGT GTACAGGCGT
  TTTCCCTTCC CACTTGACAG AGCAGCTCAT CTGCTGCTCA GCTTAGCAGA GGGGATGGCC
  TAGCAAGCTA ATCCACTTGA TGGTAGTGGC TTCACCTACA GTGTAGGAGT GAAAGGCGTC
  CCATATCCCG ACTGGCTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46772570	NES10660018	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33108627					SNP	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46772570	NES10660018	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95157643 () rs orientation: forward

Symbol	Name	Function Class
Bnipl	BCL2/adenovirus E1B 19kD interacting protein like	Intron
Gm64944	predicted gene, 64944	209 bp upstream
Rr580874	regulatory region 580874	707 bp proximal
Tssr34455	transcription start site region 34455	772 bp downstream
Tssr34456	transcription start site region 34456	788 bp downstream
Tssr34457	transcription start site region 34457	816 bp downstream