rs33109048 SNP Detail

Summary

• ID
  rs33109048
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:40059619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTA TATGCTCATA CACAAAAATA
  R
  CTCTTACTGC TTTCTCAAAG GAAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46235172	mCV24622207	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss144619576	ENSMUSSNP5668417	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss322624425	CHEV_8_40691932	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33109048					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40059619 () rs orientation: forward

Symbol	Name	Function Class
Msr1	macrophage scavenger receptor 1	within coordinates
Tssr2550	transcription start site region 2550	1104 bp upstream
Tssr80996	transcription start site region 80996	1996 bp upstream
Tssr80997	transcription start site region 80997	1973 bp upstream
Tssr80998	transcription start site region 80998	1560 bp upstream
Tssr80999	transcription start site region 80999	1498 bp upstream
Tssr81000	transcription start site region 81000	1314 bp upstream
Tssr81001	transcription start site region 81001	1298 bp upstream
Tssr81002	transcription start site region 81002	1272 bp upstream
Tssr81003	transcription start site region 81003	1246 bp upstream
Tssr81004	transcription start site region 81004	1194 bp upstream
Tssr81005	transcription start site region 81005	1169 bp upstream
Tssr81006	transcription start site region 81006	1132 bp upstream
Tssr81007	transcription start site region 81007	1067 bp upstream
Tssr81008	transcription start site region 81008	966 bp upstream
Tssr81009	transcription start site region 81009	935 bp upstream
Tssr81010	transcription start site region 81010	913 bp upstream
Tssr81011	transcription start site region 81011	846 bp upstream
Tssr81012	transcription start site region 81012	817 bp upstream
Tssr81013	transcription start site region 81013	653 bp upstream
Tssr81014	transcription start site region 81014	620 bp upstream
Tssr81015	transcription start site region 81015	969 bp downstream
Tssr81016	transcription start site region 81016	1574 bp downstream