rs33109714 SNP Detail

Summary

• ID
  rs33109714
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95159149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGGTCACA TGACCTTTCT
  GCCTCAGGTC CTACAGGGAG CTAGGTTTTA CTTATTTTTA GACTACTATT TATTGTGTGT
  GTATGAGTAC GTATGTGCAC CCACGCATGT GCAAGGACGT CAGGGAGGGT GTTCTTCCCT
  CTATCACTTT GCTGGATCCT GGATCTTGCA CTGCTTAGAC TGGAAGCCCA CCAGCCATCT
  Y
  CCTGTCAGCT CTGCTTGGAG GCGGAGTATA GGCTTCTGTA AAGTGGCATC CTGTTACACG
  AGTGCTGGGA TCTGAACTCG TTTTCAAGAC TGAGGAGAAC ACAGTTTTAG CTGCTGACCC
  ACCACCTCTC TAGAACTTGG AGCTTAAAAC AATTAAAAAA AAATTTAATG TGCATAGGTG
  TATTGCCTAC ATATCTGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46772579	NES10659965	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33109714					SNP	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46772579	NES10659965	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95159149 () rs orientation: forward

Symbol	Name	Function Class
Bnipl	BCL2/adenovirus E1B 19kD interacting protein like	645 bp upstream
Gm64944	predicted gene, 64944	within coordinates
Prune1	prune exopolyphosphatase	1836 bp downstream
Rr580874	regulatory region 580874	426 bp distal
Tssr34455	transcription start site region 34455	720 bp upstream
Tssr34456	transcription start site region 34456	694 bp upstream
Tssr34457	transcription start site region 34457	678 bp upstream