rs33110348 SNP Detail

Summary

• ID
  rs33110348
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:160610462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTGCTCC ACTCTGAGGG
  TTTTGGTCCA CGTAGAAACT AGGAAGACAA AAGGTAATGG CTCAAGATAG GGACAGCTCA
  ACACTCACCT AGAGGACAAA ACGAGTCTCC AACCAGCAAG GTTGCTCCCT CATCCCTACC
  CTCCACAGGA GGCAGCTGTG TGACAGATGT CCTAGGGCCA GCAGGGAGGA AGGGACACAG
  K
  TATGACATAG CTACTGTCAG AACAAGTAAA ATCTCTGAGA GCCATCTGGG TCTGGAGAAT
  GCAGCTGAGC TTCCTGGTAG CACATACCCA AGGGCAGCTG GAGAGAGACT TAGGATACAG
  GTAGCTACCT ACCAGGTCCC ACCCAACTCT CCTTGTGCTT CCAGAGGGGA GGGTGCCCTC
  GTGCTAAGGT ATTTTGTTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45238642	mCV23576573	ABI	CRAMUS_MOUSE	f	SNP	T	G	G	G
ss148150716	ENSMUSSNP289067	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33110348					SNP	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:160610462 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Plcg1	phospholipase C, gamma 1			Intron
Rr569070	regulatory region 569070			1639 bp distal
Tssr27247	transcription start site region 27247			1412 bp downstream
Zhx3	zinc fingers and homeoboxes 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant