rs33110475 SNP Detail

Summary

• ID
  rs33110475
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115048051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATGTAATTAA ACCTTCCCTG GTTTACCCTC TGAAAACCTG CTATCCCATC CTCCCTCCTC
  TGCTGCTATG AGGGTGTTCC CTTCACCCAC CCACCCACTC CTGCCTCCCG GCCCCGGCCC
  CGGCATTCCC CTATTTTTTT GGTTTTCGTT TTCGTTTTGG TTTTGGTTTT GGTTTATTTA
  ATTTTTTTTT TAATTTTTTG TTTTTTTTTT TTAAGACAGG GTTTCTTTGC ATAGTCCTGG
  AACTCACTCT GTAGACCAGG CTGGCCTCAA TCCCAAAACC TGTACCTGCC AGCCCCCCCC
  M
  CCCCCACACA CACACACACT GATATACTAG GATCCTCCTG TAAGTCCTGT AAGTGCTCGG
  CTGAGGGACG TCTCATTTAA CCTACCAGGA GACCATTCCA GATCCAAGCC ATCTTTTCAG
  CAAATATGTC AGAATTCTGT GACGTGACAT ATTTTAATGT CTAGAACCTA ACCCTGAAGC
  AGAATTTTTA GGACACATCC AGACTTTTGG CATAACAGTG ATCGCCCTTG AACAACCCTC
  CTAAAGCCAG ACACAACTAT TAAATGACAT CACTGTAATC CCCAGGCTCC CATAAGGACA
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss45738458	mCV24698239	ABI	CRAMUS_MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs33110475					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115048051 () rs orientation: forward

Symbol	Name	Function Class
Oasl2	2'-5' oligoadenylate synthetase-like 2	within coordinates
Rr618060	regulatory region 618060	483 bp proximal
Tssr48138	transcription start site region 48138	81 bp downstream
Tssr48139	transcription start site region 48139	1021 bp upstream
Tssr48140	transcription start site region 48140	1055 bp upstream
Tssr48141	transcription start site region 48141	1264 bp upstream
Tssr48142	transcription start site region 48142	1363 bp upstream
Tssr48143	transcription start site region 48143	1392 bp upstream
Tssr48144	transcription start site region 48144	1445 bp upstream
Tssr48145	transcription start site region 48145	1501 bp upstream
Tssr48146	transcription start site region 48146	1550 bp upstream
Tssr48147	transcription start site region 48147	1592 bp upstream
Tssr48148	transcription start site region 48148	1654 bp upstream
Tssr48149	transcription start site region 48149	1681 bp upstream
Tssr48150	transcription start site region 48150	1692 bp upstream
Tssr48151	transcription start site region 48151	1710 bp upstream
Tssr48152	transcription start site region 48152	1792 bp upstream
Tssr48153	transcription start site region 48153	1882 bp upstream
Tssr48154	transcription start site region 48154	1894 bp upstream
Tssr52739	transcription start site region 52739	996 bp downstream