rs33110571 SNP Detail

Summary

• ID
  rs33110571
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95180991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGTAACA TTGCAGCTGA
  ATCATGGCCA GTCAGCTCCC CAGCGCGGAG GAAAGGGACC AAAGCCACTT CACAGCGTGA
  AGGGAGGAGA CATGGTCTCC AATTATAAGA TGAGCACCAA ACTCTGGTGC TTAGCTAAGG
  CCAGCAGCAG ATGGCCACGC TTTGTCACAG GTGGCAGCCC TGGACCTGGG GTGGCCAAAG
  R
  CATGCAGCCT TCTCTTCCTT CCCACCACCC ACCAGCACCA CCCTCTGTTG CCCAGGTCTG
  CCTGGATTAG CCACCCCGCC CCCAAATGAT GGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGAGTGTG AGGCCCTCTC TGCACTGTCA GGAAGTGGTA GAACACCATT
  TGGACAATCA CAGACTAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46772804	NES10658942	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33110571					SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46772804	NES10658942	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95180991 () rs orientation: forward

Symbol	Name	Function Class
Prune1	prune exopolyphosphatase	Intron
Rr580881	regulatory region 580881	within coordinates
Rr580882	regulatory region 580882	504 bp proximal
Rr580883	regulatory region 580883	963 bp proximal