rs33110930 SNP Detail

Summary

• ID
  rs33110930
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:129916559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATTTTGT CCTCCGATTC
  AATGGTGGAG GTTAGGTTTT TGCTTCCGAT GGCCGGCTGG CCTACTCCAC AACCTGACTG
  ACCTTGATTT TCACTGTCTC CTGCCTTAGC CTCTCAAGTA AACTGGATTA GGGGCTTACT
  GGGGTCTGCT CTTGGGCTGT TTACTTAACC CTTCTCTGTT TTGTTTTGGG ACAATGCCTC
  Y
  GGTAACGGAT GTTGCCTTGG ATCTCGCTGT TCTCACGTCT CAGCCTCCTA GTACTGGTCA
  CGCAGGAAAA ACTCTGTTTT TCTGTTATAA AGAATTTACT AATAAACGTG TTTGGAAATA
  TTAAATTACA TAAGCAGAAT TTCGCTAAAG GAGCTCTGCT CCCAACATGT CTGGAAGATA
  GTGAACTAGC CGAGCTTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45738545	mCV25038614	ABI	CRAMUS_MOUSE	f	SNP			T					C
ss60840615	NES16012839	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	C		T	C	C	C		T	C	C	T		C
ss144477404	ENSMUSSNP5488796	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss321692415	CHEV_5_130363588	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33110930					SNP	C	C	T	C	T	C	C	C	T	C	C	C	T	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60840615	NES16012839	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:129916559 () rs orientation: forward

Symbol	Name	Function Class
Chchd2	coiled-coil-helix-coiled-coil-helix domain containing 2	248 bp upstream
Cpgi16684	CpG island 16684	97 bp distal
Rr399383	regulatory region 399383	209 bp downstream
Rr621372	regulatory region 621372	259 bp distal
Rr621373	regulatory region 621373	within coordinates
Tssr53498	transcription start site region 53498	561 bp upstream
Tssr53499	transcription start site region 53499	413 bp upstream
Tssr53500	transcription start site region 53500	289 bp upstream
Tssr53501	transcription start site region 53501	238 bp upstream