rs33111156 SNP Detail

Summary

• ID
  rs33111156
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23865741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGAT TCAAGGCCCC TGGCTGCTGC
  Y
  ACACCATCAA TACCAGATCC TCACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss39496023	mCV23796526	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss145329972	ENSMUSSNP5972459	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss325326692	CHEV_17_23783734	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33111156					SNP	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23865741 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8679	CpG island 8679	1296 bp distal
Mmp25	matrix metallopeptidase 25	1735 bp upstream
Rr329681	regulatory region 329681	1460 bp proximal
Rr339268	regulatory region 339268	1140 bp distal
Tssr146620	transcription start site region 146620	1809 bp upstream
Tssr146621	transcription start site region 146621	1771 bp upstream
Tssr146622	transcription start site region 146622	1730 bp upstream
Tssr146623	transcription start site region 146623	1712 bp upstream
Tssr146624	transcription start site region 146624	1694 bp upstream
Tssr146625	transcription start site region 146625	1506 bp upstream
Tssr146626	transcription start site region 146626	1458 bp upstream