rs33111707 SNP Detail

Summary

• ID
  rs33111707
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95181249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCTGGAT TAGCCACCCC
  GCCCCCAAAT GATGGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGAGT
  GTGAGGCCCT CTCTGCACTG TCAGGAAGTG GTAGAACACC ATTTGGACAA TCACAGACTA
  GGACCGGGTC CAACACTGTT TCCTACTTGA TATGGGGTCC TGGTTCCTAT ATAATGCAAG
  Y
  GCAGGGCTGG CAGGATGGCT CAGTGGGCAA AGGCTGCCAG TCTTGACACC CTAGTTCAGT
  TCCTAAGACC AACACAGTGG GAAGAGTTGG GAATCTTGCC AAGCTGTTCT CTGACCTTTA
  CAGATGTGCT TGCTGCTGCA AGCTCCCACC CCCCACCCCC CACAAAATGT ATAAATAAAT
  GTTAAGAGTT TTTATTTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46772813	NES10658948	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	C	T	T	T	C	T	T	C	T
ss135510404	ENSMUSSNP1224250	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33111707					SNP	C	C	T	T	T	C	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46772813	NES10658948	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95181249 () rs orientation: forward

Symbol	Name	Function Class
Prune1	prune exopolyphosphatase	Intron
Rr580881	regulatory region 580881	181 bp distal
Rr580882	regulatory region 580882	246 bp proximal
Rr580883	regulatory region 580883	705 bp proximal