rs33111924 SNP Detail

Summary

• ID
  rs33111924
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:101010227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAA GTTCACAGAG AATGTGGGAA
  Y
  AATACTTTGG CAACAAGAAT TTGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45739008	mCV22946861	ABI	CRAMUS_MOUSE	f	SNP	T	T					C		T
ss61202765	NES16711379	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T		T	T	T	T		T	C	T	C		C
ss148929932	ENSMUSSNP5949657	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
ss321627760	CHEV_5_101291380	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33111924					SNP	T	T	T	T	C	T	C	T	T	T	T	T	T	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61202765	NES16711379	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:101010227 () rs orientation: forward

Symbol	Name	Function Class
Gm73351	predicted gene, 73351	within coordinates
Gpat3	glycerol-3-phosphate acyltransferase 3	within coordinates
Rr378349	regulatory region 378349	71 bp upstream
Rr615578	regulatory region 615578	824 bp distal
Rr615579	regulatory region 615579	335 bp distal
Rr615580	regulatory region 615580	180 bp distal
Rr615581	regulatory region 615581	1966 bp proximal
Tssr47495	transcription start site region 47495	340 bp downstream