rs33111993 SNP Detail

Summary

• ID
  rs33111993
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:33857580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCCCCATCT CCAGTCCGTT ACCCAAGCTG TGCTCTGCTA
  AACCCTTCCT TATCTACCCT TGTGGTCATC AACTCACTTA GACTGGGGCT TCAACAAAGA
  M
  ATGTCTGACC CCAGGCAAGA ATTGCTTCCT TCCCAGAGAT CCTTCTGAGT CCATCTCTAG
  ATAGATTTAC AAGGTTCTGT CCTCTCTGTC CTCCAATCT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss39496044	mCV24098555	ABI	CRAMUS_MOUSE	f	SNP		A	C					A		C
ss62686862	NES17316528	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	A	C		C	C	A	A		C	A	C	C
ss145493349	ENSMUSSNP2845898	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C							C
ss325366942	CHEV_17_33775551	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs33111993					SNP	A	A	C	C	C	A	C	A	C	C	A	A	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62686862	NES17316528	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:33857580 () rs orientation: forward

Symbol	Name	Function Class
Gm20507	predicted gene 20507	within coordinates
Pram1	PML-RAR alpha-regulated adaptor molecule 1	within coordinates
Rr392542	regulatory region 392542	887 bp upstream
Rr525901	regulatory region 525901	1198 bp proximal
Tssr143785	transcription start site region 143785	794 bp downstream
Tssr143786	transcription start site region 143786	776 bp downstream
Tssr143787	transcription start site region 143787	496 bp downstream
Tssr143788	transcription start site region 143788	483 bp downstream
Tssr143789	transcription start site region 143789	465 bp downstream
Tssr147440	transcription start site region 147440	1305 bp downstream