rs33112043 SNP Detail

Summary

• ID
  rs33112043
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:25155325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAGGGGCAA ATTCCAAGAC CTATCCCACA TGACTCTTAG
  TCAGTTGGTA CAGGGAAGTG CACCTTTCCC TTCTGCTGAG ATGGCACCTG CAGTGTCTAC
  R
  CTACAACAGC TAGAATGTAG GTTTATCCAG GTTAATGCTG TGCCCTCCGC CTCAGTTTCC
  TTGGGTGAAC TTTTGTCCTG AGCCATGCCA CCTTACCTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45238130	mCV25419260	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss146377550	ENSMUSSNP5417857	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33112043					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:25155325 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11304	CpG island 11304	1371 bp distal
Tprn	taperin	within coordinates
Tssr16684	transcription start site region 16684	1966 bp downstream
Tssr16685	transcription start site region 16685	1945 bp downstream
Tssr16686	transcription start site region 16686	1932 bp downstream
Tssr16687	transcription start site region 16687	1382 bp downstream
Tssr16688	transcription start site region 16688	1023 bp downstream
Tssr16689	transcription start site region 16689	1000 bp downstream
Tssr16690	transcription start site region 16690	244 bp upstream