rs33112175 SNP Detail

Summary

• ID
  rs33112175
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:27748881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCTTTAACTC CTCAACTTAT CCAAGTGCCT TAGGGGTAAT AGAACACTGT CTTAGTCAGT
  GTTCTATTGC TGTGACGAGA TACCATGACC ACTGCAACTC TTATAAAAGA GCACATTCAA
  TTGAGGTTTC TTGCTGTTTC AGAGGTTTAG TCCATTGTCA TCATGGCAGG GAGCATGGTG
  GCACACAGGC AGACATGGTG CTGGAGATGT AGATGAGAGT TTCTTATTTG GGTCTGTAGG
  CAGCTGTAAG AGAGAGCCAC TGGGCTTGGC TTGGCCAATT TTTTTTTGTT TTTTTTTTGT
  K
  TTTGTTTTTG TTTTTTTGTT TTTGTTTTTT TGAGACAGGG TTTCTCTGTG TAGCTCTGGC
  AGTCCTGGAA CTCACTTTGT AGACCAGGCT GGCCTCGAAC TCAGAAATCT GCCTGCCTCT
  GCCTCCCGAG TGCTGATCCC CCAACCTTCC CTTCCCGAGT TCTAGGATTA TAAGCTTACA
  AAGTGCCACC ACGTTCAGTT TTTATGTTGA TGCTTCGGAT TTAACCGTGG ACTTAGTGTA
  TACGTGGTAA ACTGTCTACC AAGTGAGCTG TGTTCCAAGC TTCCCCTTCC CCGTGTTTTT
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46235946	mCV24519084	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	T	G
ss148886531	ENSMUSSNP5525660	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33112175					SNP	T	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:27748881 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20220	CpG island 20220	1085 bp proximal
Eif4ebp1	eukaryotic translation initiation factor 4E binding protein 1	1474 bp upstream
Rr176179	regulatory region 176179	1881 bp distal
Rr186444	regulatory region 186444	519 bp proximal
Tssr76776	transcription start site region 76776	1468 bp upstream
Tssr76777	transcription start site region 76777	1479 bp upstream
Tssr76778	transcription start site region 76778	1542 bp upstream
Tssr76779	transcription start site region 76779	1576 bp upstream
Tssr76780	transcription start site region 76780	1644 bp upstream