rs33113290 SNP Detail

Summary

• ID
  rs33113290
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:49102333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCTCCTC GGGCACTGTG
  TATACATGGT GTACAGACAT GACATACATG CAGACAAAAT AATTCATTTA AAATAGTAGT
  GGAATCTTTT TAAAAGGAAG GATGAATGGA AGAAAGGGGG AAAAAAAAGA ATCTTTTCAA
  GTAAGAATTT TAGGACAAGA TGAATATAGT ATAGAATTCT ACCAGAATTT TAAAGAAAAA
  Y
  GAACACCAAA ATTCCTTAAA TTGTTCCATA AAATAAATAA GAATACCCCC TTGTTTTTGG
  TTTTTTTTTA CAAAATCAAT ATTACACTGA TATCAAAACC AGCCAAAGGT CCAACTTAAA
  AAGAAAACTT AGGCCAGTCT CCCTGAGTAA CATAATTGCA AGAATTCTCA ATAAAATAAT
  TGCAAGATGA ACTTGGCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45237996	mCV24342090	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33113290					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:49102333 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbd5	methyl-CpG binding domain protein 5			Intron
				Noncoding-Transcript-Variant
Rr556611	regulatory region 556611			193 bp distal