rs33113540 SNP Detail

Summary

• ID
  rs33113540
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153068641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGGTCAGTA CCTGGAAAGT ATAATTCTGC CTAAATGTTC
  CTGCCTTTCT CATCAAAAGA TACCACAGCT CCCTCATCTG AAACCCCTAG ACCTCTCATA
  K
  GACATCCACT ATCTAGAGTA TAAAGTAGAA AACTCTAACT GGGATTCTGA CCCACTGTGG
  TGGACAGTGG ACATTTATCA AGGGGGAGGG TGAAATAAA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45238995	mCV23160159	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	T	G
ss147988246	ENSMUSSNP1833124	ENSEMBL	ENSEMBL_Sanger	f	SNP			G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33113540					SNP	T	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153068641 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12481	CpG island 12481	1281 bp distal
Plagl2	pleiomorphic adenoma gene-like 2	1048 bp downstream
Rr567583	regulatory region 567583	790 bp distal
Rr567584	regulatory region 567584	1259 bp proximal
Rr567585	regulatory region 567585	1854 bp proximal
Tspyl3	TSPY-like 3	1280 bp upstream
Tssr26887	transcription start site region 26887	1669 bp upstream
Tssr26888	transcription start site region 26888	1327 bp upstream
Tssr26889	transcription start site region 26889	1279 bp upstream