rs33114898 SNP Detail

Summary

• ID
  rs33114898
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30305375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGTC CCAGTCTGTT TGCGGACACT
  Y
  GGTCCGCTCC GCCCCTCGCG CTGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45239096	mCV23383226	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	C
ss146398631	ENSMUSSNP6378003	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss320221001	CHEV_2_30270883	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33114898					SNP	T	T	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30305375 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11436	CpG island 11436	within coordinates
Crat	carnitine acetyltransferase	within coordinates
Gm16323	predicted gene 16323	25 bp downstream
Ptpa	protein phosphatase 2 protein activator	687 bp upstream
Rr554310	regulatory region 554310	1637 bp distal
Rr554311	regulatory region 554311	975 bp distal
Rr554312	regulatory region 554312	within coordinates
Rr554313	regulatory region 554313	151 bp proximal
Rr554314	regulatory region 554314	790 bp proximal
Tssr17115	transcription start site region 17115	255 bp upstream
Tssr17116	transcription start site region 17116	668 bp upstream
Tssr17117	transcription start site region 17117	717 bp upstream
Tssr17118	transcription start site region 17118	733 bp upstream
Tssr17119	transcription start site region 17119	824 bp upstream
Tssr23369	transcription start site region 23369	1245 bp upstream
Tssr23370	transcription start site region 23370	1183 bp upstream
Tssr23371	transcription start site region 23371	within coordinates
Tssr23372	transcription start site region 23372	26 bp downstream
Tssr23373	transcription start site region 23373	55 bp downstream
Tssr23374	transcription start site region 23374	75 bp downstream
Tssr23375	transcription start site region 23375	97 bp downstream
Tssr23376	transcription start site region 23376	146 bp downstream
Tssr23377	transcription start site region 23377	209 bp downstream
Tssr23378	transcription start site region 23378	251 bp downstream
Tssr23379	transcription start site region 23379	271 bp downstream
Tssr23380	transcription start site region 23380	404 bp downstream
Tssr23381	transcription start site region 23381	640 bp downstream