rs33115201 SNP Detail

Summary

• ID
  rs33115201
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:126573126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGGCATATG CCACCATGCC TGGCAGGTCC TAGAGCATAC
  CAGCTACTCA CAACCTCCCT GACTAACATA CCTCTGTACC TTGGCCCATA CAATCCCTAC
  W
  GCTTAGAATA CTTAGAGCTG TTTCCCTAGA AAATTTTTTT CTTTAGGTGT TTCCTTCTTC
  AGGAAGCTCT ATGATGCCTT TCCTTCCTAG CCCAGATGAG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47258381	NES11552970	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33115201					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47258381	NES11552970	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126573126 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdiptos	CDIP transferase, opposite strand			Intron
				Noncoding-Transcript-Variant
Cpgi19724	CpG island 19724			1836 bp proximal
Gm73941	predicted gene, 73941			409 bp upstream
Rr655656	regulatory region 655656			1461 bp proximal
Rr655657	regulatory region 655657			1824 bp proximal
Tssr69140	transcription start site region 69140			411 bp upstream
Tssr69141	transcription start site region 69141			1661 bp upstream
Tssr74865	transcription start site region 74865			1446 bp downstream
Tssr74866	transcription start site region 74866			1833 bp downstream
Tssr74867	transcription start site region 74867			1890 bp downstream