rs33115203 SNP Detail

Summary

• ID
  rs33115203
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:126574472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGGGGCCTT AGGGTTAAGG CTCAAGGCTA AGGCTCAAGG
  CTCATGGCTC AGACAGGGCT CCCTGCCTGG CTCTTCCCAT CTCCTTCACT TTTCCATTGT
  Y
  GTTTACCTGC CCTCCACCTA AGGAGGCGGC AGCTTGAGAT GACCTGATGT CCTTTTTGTC
  CCCACTCCTG GCAGATGTGG ATGCCATCCT CCTGGAAACG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47258384	NES11552943	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33115203					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47258384	NES11552943	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126574472 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdipt	CDP-diacylglycerol--inositol 3-phosphatidyltransferase			1158 bp upstream
Cdiptos	CDIP transferase, opposite strand			Intron
				Noncoding-Transcript-Variant
				Splice-Site
Cpgi19724	CpG island 19724			490 bp proximal
Gm73941	predicted gene, 73941			262 bp downstream
Rr368439	regulatory region 368439			666 bp upstream
Rr655656	regulatory region 655656			115 bp proximal
Rr655657	regulatory region 655657			478 bp proximal
Tssr2401	transcription start site region 2401			1280 bp upstream
Tssr69140	transcription start site region 69140			931 bp downstream
Tssr69141	transcription start site region 69141			315 bp upstream
Tssr69142	transcription start site region 69142			979 bp upstream
Tssr69143	transcription start site region 69143			1038 bp upstream
Tssr69144	transcription start site region 69144			1107 bp upstream
Tssr69145	transcription start site region 69145			1132 bp upstream
Tssr69146	transcription start site region 69146			1224 bp upstream
Tssr69147	transcription start site region 69147			1247 bp upstream
Tssr69148	transcription start site region 69148			1310 bp upstream
Tssr74865	transcription start site region 74865			100 bp downstream
Tssr74866	transcription start site region 74866			487 bp downstream
Tssr74867	transcription start site region 74867			544 bp downstream
Tssr74868	transcription start site region 74868			792 bp downstream
Tssr74869	transcription start site region 74869			824 bp downstream
Tssr74870	transcription start site region 74870			832 bp downstream