rs33115319 SNP Detail

Summary

• ID
  rs33115319
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:52210569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGGTGCAGGG TGGTAGGATT TGCTGAATGC AATAGGATCA GGAGTTCAAG GCCAGCCTGG
  AATATGTGAT TTTTTAGCCA GGTGGTGATG GTATGCCTTA TTAATCCCAG CACTCAGCAG
  GCAGAGGTAG GTGGATCTCT GTGAGTTTGA GGCCAGCCTG ATCTACACAG TGAGTTCCAG
  GACAGTCAGG GGTAAATAGT GAGACCCTGT CTCAAAGTTC TCACCCTCCA AAAAATATTA
  GAAAGAAAGA GAGAAAGAAA GAAAGAAAGA AAGAAAGAAA GAAAGAGAGA GAGAGAGAGA
  R
  AGAGAGAGAA AGAGAGAAAG AGAGAAAGAA AGAAAGAAAG AAAGAAAGAG AAGAGAGAGA
  GAAAGAAAGG AAGAAAGGAA CAAAGAAAGA AGGAAAGAAA GAAAAGAAGG AAAAGAAAAC
  CTTGCTTTGA CCCAAGAATC AAGTGACTTT CACAAAATAG TTTGGAGATT GGGACAGAAA
  TGAGATGACC TGGGACATGT TCAGGTCTCT TCCAGAGGGA CAGAACTAGC TTGAGCTCAT
  CTTTTGAAAA CCAAATAGGC ATTCCTATTT TCAAGTAATT GTGAAGATGC CTGGAGTAAG
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss39496638	mCV25232034	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs33115319					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:52210569 () rs orientation: forward

Symbol	Name	Function Class
Gm20098	predicted gene, 20098	within coordinates
Rr335418	regulatory region 335418	within coordinates
Rr370289	regulatory region 370289	538 bp upstream
Rr405357	regulatory region 405357	254 bp upstream
Tssr145177	transcription start site region 145177	664 bp upstream
Tssr148690	transcription start site region 148690	379 bp downstream
Tssr148691	transcription start site region 148691	409 bp downstream