rs33115795 SNP Detail

Summary

• ID
  rs33115795
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92472717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTAT TTATTCTAAA TGTCTCTCAC
  Y
  ACGTCTGTTG ATTTTTATAC ATTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45738883	mCV25083290	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss148831436	ENSMUSSNP2548962	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss321612247	CHEV_5_92753884	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33115795					SNP	C	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92472717 () rs orientation: forward

Symbol	Name	Function Class
Cxcl9	C-X-C motif chemokine ligand 9	within coordinates
Rr614603	regulatory region 614603	1221 bp distal
Tssr1547	transcription start site region 1547	1944 bp downstream
Tssr47287	transcription start site region 47287	1867 bp downstream
Tssr47288	transcription start site region 47288	1079 bp downstream
Tssr47289	transcription start site region 47289	1069 bp downstream
Tssr47290	transcription start site region 47290	1054 bp downstream
Tssr47291	transcription start site region 47291	1012 bp downstream
Tssr47292	transcription start site region 47292	259 bp upstream
Tssr47293	transcription start site region 47293	1907 bp upstream
Tssr47294	transcription start site region 47294	1944 bp upstream
Tssr51866	transcription start site region 51866	1752 bp upstream
Tssr51867	transcription start site region 51867	1150 bp upstream
Tssr51868	transcription start site region 51868	1104 bp upstream
Tssr51869	transcription start site region 51869	1062 bp upstream
Tssr51870	transcription start site region 51870	1012 bp upstream
Tssr51871	transcription start site region 51871	977 bp upstream
Tssr51872	transcription start site region 51872	254 bp downstream
Tssr51873	transcription start site region 51873	1932 bp downstream
Tssr51874	transcription start site region 51874	1957 bp downstream