rs33115940 SNP Detail

Summary

• ID
  rs33115940
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:126575026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGCAGTC CCCGACCCGG
  CTAATTGGTT GAAATCTTAG GGTACTCGGC AGGAGGGGGG ACGGAAAGTT CTAAGGGGAC
  CCTATGATGG GCCTCAGGGG ATTGGGAGTC CGGGAAAGAA GGTTGGGAAG AGGGAGAGCC
  AGGGAAGTGC TGCTCCGGAT TGCTATAAAG ACCTAAATGT TTACGGAAGT TCTATGGTTC
  Y
  GTTGCTAGGA GACTAGAGGT TCTAGAACTA AGGACAATGT CCTAGTGTGC CATACTGGCT
  CTCCTGATTC CTTCTTGGAG GCGGTGACCC CAGAGTTATA TCAAGGCATT TAGGAGATGG
  AAAGGCGTTA GGGTGGAACT TGGGCTCTAA TCCTCCCACC ACCAGGGCGG CGCTAGAAGC
  AAGCGGCAGG CATGCTCGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47258393	NES11552946	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33115940					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47258393	NES11552946	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126575026 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdipt	CDP-diacylglycerol--inositol 3-phosphatidyltransferase			604 bp upstream
Cdiptos	CDIP transferase, opposite strand			Intron
				mRNA-UTR
Cpgi19724	CpG island 19724			within coordinates
Gm73941	predicted gene, 73941			816 bp downstream
Rr368439	regulatory region 368439			112 bp upstream
Rr655656	regulatory region 655656			77 bp distal
Rr655657	regulatory region 655657			within coordinates
Tssr2401	transcription start site region 2401			726 bp upstream
Tssr69140	transcription start site region 69140			1485 bp downstream
Tssr69141	transcription start site region 69141			230 bp downstream
Tssr69142	transcription start site region 69142			425 bp upstream
Tssr69143	transcription start site region 69143			484 bp upstream
Tssr69144	transcription start site region 69144			553 bp upstream
Tssr69145	transcription start site region 69145			578 bp upstream
Tssr69146	transcription start site region 69146			670 bp upstream
Tssr69147	transcription start site region 69147			693 bp upstream
Tssr69148	transcription start site region 69148			756 bp upstream
Tssr74865	transcription start site region 74865			438 bp upstream
Tssr74866	transcription start site region 74866			11 bp upstream
Tssr74867	transcription start site region 74867			7 bp upstream
Tssr74868	transcription start site region 74868			238 bp downstream
Tssr74869	transcription start site region 74869			270 bp downstream
Tssr74870	transcription start site region 74870			278 bp downstream