rs33115942 SNP Detail

Summary

• ID
  rs33115942
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:126575072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCAGGAGG GGGGACGGAA
  AGTTCTAAGG GGACCCTATG ATGGGCCTCA GGGGATTGGG AGTCCGGGAA AGAAGGTTGG
  GAAGAGGGAG AGCCAGGGAA GTGCTGCTCC GGATTGCTAT AAAGACCTAA ATGTTTACGG
  AAGTTCTATG GTTCCGTTGC TAGGAGACTA GAGGTTCTAG AACTAAGGAC AATGTCCTAG
  Y
  GTGCCATACT GGCTCTCCTG ATTCCTTCTT GGAGGCGGTG ACCCCAGAGT TATATCAAGG
  CATTTAGGAG ATGGAAAGGC GTTAGGGTGG AACTTGGGCT CTAATCCTCC CACCACCAGG
  GCGGCGCTAG AAGCAAGCGG CAGGCATGCT CGGAGCCTCT CTAGCCACCT CTTCCCAGCC
  TGGGTCCCGG AGAGCGACGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47258396	NES11552947	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	C	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33115942					SNP	T	C	T	T	C	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47258396	NES11552947	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126575072 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdipt	CDP-diacylglycerol--inositol 3-phosphatidyltransferase			558 bp upstream
Cdiptos	CDIP transferase, opposite strand			Intron
				mRNA-UTR
Cpgi19724	CpG island 19724			within coordinates
Gm73941	predicted gene, 73941			862 bp downstream
Rr368439	regulatory region 368439			66 bp upstream
Rr655656	regulatory region 655656			123 bp distal
Rr655657	regulatory region 655657			within coordinates
Tssr2401	transcription start site region 2401			680 bp upstream
Tssr69140	transcription start site region 69140			1531 bp downstream
Tssr69141	transcription start site region 69141			276 bp downstream
Tssr69142	transcription start site region 69142			379 bp upstream
Tssr69143	transcription start site region 69143			438 bp upstream
Tssr69144	transcription start site region 69144			507 bp upstream
Tssr69145	transcription start site region 69145			532 bp upstream
Tssr69146	transcription start site region 69146			624 bp upstream
Tssr69147	transcription start site region 69147			647 bp upstream
Tssr69148	transcription start site region 69148			710 bp upstream
Tssr74865	transcription start site region 74865			484 bp upstream
Tssr74866	transcription start site region 74866			57 bp upstream
Tssr74867	transcription start site region 74867			53 bp upstream
Tssr74868	transcription start site region 74868			192 bp downstream
Tssr74869	transcription start site region 74869			224 bp downstream
Tssr74870	transcription start site region 74870			232 bp downstream