rs33115953 SNP Detail

Summary

• ID
  rs33115953
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:181286031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACGCGCTCTG TAGACCAGGC TGGCCTCAAA CTCAGAAATC
  TGCCTGCCTC TGCCTCCCAA GTGCTGGGAT TAAAGGCATG CACCACCACT GCCTGGCTGG
  Y
  TTATAGTTTC TGAGGTTTAA TCCGTTATTG TCATGGTGGG AAGCATGGCT CTGAGTAAGC
  AGACAGGAAG AGCTGAGAGT TGTACATATG GATCTGTAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45239029	mCV22775696	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	C
ss148402845	ENSMUSSNP4981504	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33115953					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181286031 () rs orientation: forward

Symbol	Name	Function Class
Prpf6	pre-mRNA splicing factor 6	Intron
Rr573060	regulatory region 573060	237 bp proximal
Rr573061	regulatory region 573061	320 bp proximal