rs33116352 SNP Detail

Summary

• ID
  rs33116352
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:24693513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTTT CAGAGCAACC ACAGCTGGGC
  Y
  GTGCTGTTTG ACGGGCAGAA CGTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39496450	mCV24346000	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss145356444	ENSMUSSNP122831	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss325331948	CHEV_17_24611484	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33116352					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24693513 () rs orientation: forward

Symbol	Name	Function Class
Bricd5	BRICHOS domain containing 5	Coding-Synonymous
Mlst8	MTOR associated protein, LST8 homolog (S. cerevisiae)	mRNA-UTR
Pgp	phosphoglycolate phosphatase	1429 bp downstream
Rr523321	regulatory region 523321	562 bp distal
Tssr143037	transcription start site region 143037	617 bp downstream