rs33116543 SNP Detail

Summary

• ID
  rs33116543
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126628384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGT ACCCCACTGT CTACAATACT
  M
  GAGGACAAGC ATCTAGGGCT TCTTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47258936	NES11549960	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A	A	A	C	A	A	A		C	A	C	C		C
ss322451017	CHEV_7_134172726	CHEVERUD	SCREENING_POP	f	SNP											C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33116543					SNP	A	A	C	A	A	A	C	A	A	A	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47258936	NES11549960	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126628384 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19727	CpG island 19727	1032 bp distal
Gm31749	predicted gene, 31749	within coordinates
Kif22	kinesin family member 22	within coordinates
Rr370584	regulatory region 370584	1490 bp downstream
Rr381451	regulatory region 381451	311 bp upstream
Rr655675	regulatory region 655675	1698 bp distal
Rr655676	regulatory region 655676	1210 bp distal
Tssr74928	transcription start site region 74928	1083 bp upstream